rs257769861 SNP Detail

Summary

• ID
  rs257769861
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5878259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGCAATTC TTAATGAGGA TGTCAAGTTA
  TATTAAAACC AAAACAAACA ACAAAAAAAT AAAATACCCA CAAAAAAACA AAAAACAGGA
  AAGCCTCTAC ACTAGTAATT TTCCTGAAAA GTCTTAACAC ATTATGACTT ACAGTGAGAG
  R
  GAAATATCAC ACAGTCCAGT AACCCTAGAA CAATGACTTC TGAGAGTAAC TGAGCCTCCA
  GTGAGGCGCA CCAAACACCC GGGTGTCATG GGACACCATA GCTGTGTACT CTGTAGGATG
  AAGAGAAGTG TCACAAAGGT GTGGGCAGCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325717594	CHEV_19_5828231	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257769861					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5878259 () rs orientation: forward

Symbol	Name	Function Class
Neat1	nuclear paraspeckle assembly transcript 1 (non-protein coding)	within coordinates
Rr359206	regulatory region 359206	142 bp proximal
Tssr157767	transcription start site region 157767	1485 bp upstream
Tssr157768	transcription start site region 157768	1443 bp upstream
Tssr157769	transcription start site region 157769	1391 bp upstream
Tssr157770	transcription start site region 157770	1302 bp upstream
Tssr157771	transcription start site region 157771	1260 bp upstream
Tssr157772	transcription start site region 157772	within coordinates
Tssr157773	transcription start site region 157773	65 bp downstream
Tssr157774	transcription start site region 157774	1538 bp downstream