rs257778312 SNP Detail

Summary

• ID
  rs257778312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:123829736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGGGACGC GCGTGGGGCA
  GGAGGTGACG GCTGTGCTTT TCCTGCAGGC GCAAGGCCCG GCAGGCGAAA GCGCGTCGCA
  TCGCCCCTCG CCCCGCGTCC GGCCCCATCA GGCCCATCGT GAGGTGCCCT ACAGTGAGAT
  ACCACACCAA GGTCCGGGCT GGCAGGGGCT TCAGCCTGGA GGAGCTCAGG GTGAGTGCGG
  Y
  AGGGCGAGGT CCCTTGGCAG GTCCCTCGGG CTCGGTGGAA TGATGACATT CTCCGGAATC
  GCTGTACTGA CTTGATGAAA GTACTTTTGA ACCCTTTTCC ATCTGATGAC ACCGAGTTTT
  CTCGGCAGGG CCGGCTTGGG GTGGGGTGAC TGCGAGGTGG GTGACCAGTT TCTGTTTCTG
  AACAGGTGGC TGGCATCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376335308	MGP_WTSI_8_125626897	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257778312					SNP	T	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376335308	MGP_WTSI_8_125626897	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:123829736 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21239	CpG island 21239	within coordinates
Mir7079	microRNA 7079	1978 bp upstream
Rpl13	ribosomal protein L13	within coordinates
Rr382749	regulatory region 382749	1982 bp downstream
Rr672354	regulatory region 672354	1535 bp distal
Rr672355	regulatory region 672355	637 bp distal
Snord68	small nucleolar RNA, C/D box 68	61 bp upstream
Tssr79911	transcription start site region 79911	646 bp downstream
Tssr79912	transcription start site region 79912	577 bp downstream
Tssr79913	transcription start site region 79913	543 bp downstream
Tssr83335	transcription start site region 83335	717 bp upstream