rs257780226 SNP Detail

Summary

• ID
  rs257780226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10651895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCCCTC TCTGCATTCT
  CTCTCTCTCT CTCTCCCAGC ACATGCACAC TCTTTCTCTA CCCCCTCCCC TCTGTCTTCC
  TCCCCATGTC GACTTCCCTG GCCTCCTTCC TTGGGACCAG AGAACCGACC CAAGAGCGGC
  TTCCCCATAA GCCTGCCTTT GCGTACTTCG ATTTGGCTTG AATTGACTCA TTTCACCAGC
  R
  GAGAATAACT TACCAGGATG CACGTGTGCC GCAGCGCACT TGTGGAAGTC AGAGAACAAT
  TTATGGGAGT TAATTCTCAC ATGGGTTTTG GGAATGGAAC TCTGATCTGA TATCAGATTT
  GGTGGCAAGT GATTTTGCCT GGTGAGCATT CTTGCTAGGT AAACACTCTC CTATAGAGCA
  ATATCCCGAA CTGAAAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395387195	MGP_WTSI_16_10834124	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257780226					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395387195	MGP_WTSI_16_10834124	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10651895 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7956	CpG island 7956	686 bp proximal
Gm17913	predicted gene, 17913	520 bp downstream
Gm26822	predicted gene, 26822	within coordinates
Rmi2	RecQ mediated genome instability 2	1028 bp upstream
Rr404679	regulatory region 404679	815 bp upstream
Rr511605	regulatory region 511605	538 bp proximal
Tssr137059	transcription start site region 137059	1015 bp upstream
Tssr137060	transcription start site region 137060	1055 bp upstream
Tssr137061	transcription start site region 137061	1459 bp upstream
Tssr137062	transcription start site region 137062	1489 bp upstream
Tssr139967	transcription start site region 139967	1303 bp downstream