rs257788272 SNP Detail

Summary

• ID
  rs257788272
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13262785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGACCCTA AACTCTTCCT
  CGTGGATGGT CGTCACACAG AGGCTTTTCA AGGGCAGAGG TGAGCATCAG CGTCCTATCC
  ACCGGGTGCT GCGGGTGCTG TTGTTTCTGC TATCATTGAG GCTGTGCTGG GCATTACTGA
  GGCTGTTGGA GTACCATGGA CATCGGGTCT GCACCTCAGC AGGTCCATGT TTGCTTTACT
  Y
  TTCTGTCCCT TTAATCTCGT ATCTCCTCAG TTCTTTGATT ATTGGTGCTT TGTGGAAGTG
  CATGCGTGCG TGCGTGCGTG CGTGCGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTTGT
  GCATTTCTTG TAGCTTCTTG CTGTGAATGG ACCCATGTCT TCCTTACACA TAGGAATGTT
  TGTCCCATAA GGCAAACTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505127	CHEV_8_13212785	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257788272					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13262785 () rs orientation: forward

Symbol	Name	Function Class
Gm63815	predicted gene, 63815	within coordinates
Rr368495	regulatory region 368495	682 bp upstream
Rr368496	regulatory region 368496	1187 bp upstream
Rr659886	regulatory region 659886	220 bp proximal
Rr659887	regulatory region 659887	657 bp proximal
Rr659888	regulatory region 659888	1248 bp proximal
Rr659889	regulatory region 659889	1298 bp proximal