rs257793934 SNP Detail

Summary

• ID
  rs257793934
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72197422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTGGGAC TGGTCAGATA
  TTAATAATTC ACAAATACTT GAAGCAGGAG AGAGCATTTT TCAATTCTTC TCGGTGGTTT
  GAAATAAAAA CAAAGCAGAA GACTCCATAA AAAACAGATT GAATGGAATT TTGTGATTAC
  AGCACGTAGA TGCACATCAA GTTTTCAGAG CTGGGTACAA CTCACCGCGC ACCATTAATT
  Y
  ATAGTACTTT TGCTTCTGAT AATTTGACTC AGAGTCAGGC AGTGTCTACA TTGTAAGGTT
  TTATCGTCGA ATATTCCCTT TTGAAATCTT TGTCAGCAAG TACAAAAACC ATCTAGTCTT
  GCTTCAAGTC ATAGTCAAAT AGACCATACC TGAAAATTAT TTGGAAATTT GAGTTTAAAG
  CAAGGAAGAC ATAACTATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342098	CHEV_2_72205135	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257793934					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72197422 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				Noncoding-Transcript-Variant
Rr558961	regulatory region 558961			710 bp distal
Rr558962	regulatory region 558962			203 bp distal