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rs257796922 SNP Detail
Summary
  • ID
    rs257796922
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr7:19431228 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTGCAGGCC CAGAGGAAAC
ACAGGAAGGA GATGAAGGCA GGACAGAAGG GCCAGAAACC ACAGAGCAAG AGGTGATGGT
ACTCGCTTGT GTTCCCAGAA GTTGAGAAGC TGCGGCATAA GAATTGCAGA GCCTTCGAAG
CCAGCTTGAG TTACAGAATG GGATCCTGTC TCAAGAAGCC AAAAGCCAAT CGACCAAGCA
W
GTAATAAATG TCTGTTCCTC CCAGCATCCA GAAGGCTAAA GAAGGCAGGA GGATTCAAGG
CCAACCTGGG CTACACACTA ATTGAGAAAG GAAACAAGAA GGGGCTGGGG ACCCAGATAG
GAGGCAACCC TGGATCAGCT GGTGCCTGCC GAGGGTGAAA GAGCTGGACA CTCACGTCAG
TTCTTGTGTG ACTTGGGAGC                                            

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370754800 MGP_WTSI_7_20282652 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257796922 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss370754800 MGP_WTSI_7_20282652 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19431228 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E within coordinates
Cpgi18507 CpG island 18507 225 bp distal
Cpgi18508 CpG island 18508 1096 bp proximal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 468 bp proximal
Gm71725 predicted gene, 71725 within coordinates
Rr155346 regulatory region 155346 628 bp distal
Rr167194 regulatory region 167194 within coordinates
Tssr2112 transcription start site region 2112 842 bp downstream
Tssr2113 transcription start site region 2113 812 bp downstream
Tssr2114 transcription start site region 2114 686 bp downstream
Tssr2115 transcription start site region 2115 658 bp downstream
Tssr2116 transcription start site region 2116 588 bp downstream
Tssr2117 transcription start site region 2117 534 bp downstream
Tssr2118 transcription start site region 2118 439 bp downstream
Tssr2119 transcription start site region 2119 462 bp upstream
Tssr2120 transcription start site region 2120 389 bp downstream
Tssr2121 transcription start site region 2121 363 bp downstream
Tssr2122 transcription start site region 2122 352 bp downstream
Tssr64880 transcription start site region 64880 1029 bp downstream
Tssr64881 transcription start site region 64881 966 bp downstream
Tssr64882 transcription start site region 64882 907 bp downstream
Tssr64883 transcription start site region 64883 890 bp downstream
Tssr64884 transcription start site region 64884 862 bp downstream
Tssr64885 transcription start site region 64885 784 bp downstream
Tssr64886 transcription start site region 64886 749 bp downstream
Tssr64887 transcription start site region 64887 731 bp downstream
Tssr64888 transcription start site region 64888 513 bp downstream
Tssr64889 transcription start site region 64889 406 bp downstream
Tssr64890 transcription start site region 64890 372 bp downstream
Tssr64891 transcription start site region 64891 344 bp downstream
Tssr64892 transcription start site region 64892 313 bp downstream
Tssr64893 transcription start site region 64893 219 bp downstream
Tssr64894 transcription start site region 64894 162 bp upstream
Tssr64895 transcription start site region 64895 258 bp upstream
Tssr64896 transcription start site region 64896 284 bp upstream
Tssr70973 transcription start site region 70973 974 bp upstream
Tssr70974 transcription start site region 70974 941 bp upstream
Tssr70975 transcription start site region 70975 916 bp upstream
Tssr70976 transcription start site region 70976 864 bp upstream
Tssr70977 transcription start site region 70977 843 bp upstream
Tssr70978 transcription start site region 70978 820 bp upstream
Tssr70979 transcription start site region 70979 812 bp upstream
Tssr70980 transcription start site region 70980 798 bp upstream
Tssr70981 transcription start site region 70981 774 bp upstream
Tssr70982 transcription start site region 70982 745 bp upstream
Tssr70983 transcription start site region 70983 724 bp upstream
Tssr70984 transcription start site region 70984 664 bp upstream
Tssr70985 transcription start site region 70985 629 bp upstream
Tssr70986 transcription start site region 70986 600 bp upstream
Tssr70987 transcription start site region 70987 555 bp upstream
Tssr70988 transcription start site region 70988 536 bp upstream
Tssr70989 transcription start site region 70989 498 bp upstream
Tssr70990 transcription start site region 70990 479 bp upstream
Tssr70991 transcription start site region 70991 449 bp upstream
Tssr70992 transcription start site region 70992 437 bp upstream
Tssr70993 transcription start site region 70993 408 bp upstream
Tssr70994 transcription start site region 70994 393 bp upstream
Tssr70995 transcription start site region 70995 360 bp upstream
Tssr70996 transcription start site region 70996 334 bp upstream
Tssr70997 transcription start site region 70997 268 bp upstream
Tssr70998 transcription start site region 70998 248 bp upstream
Tssr70999 transcription start site region 70999 192 bp upstream
Tssr71000 transcription start site region 71000 201 bp downstream
Tssr71001 transcription start site region 71001 231 bp downstream
Tssr71002 transcription start site region 71002 291 bp downstream
Tssr71003 transcription start site region 71003 309 bp downstream
Tssr71004 transcription start site region 71004 337 bp downstream
Tssr71005 transcription start site region 71005 688 bp downstream
Tssr71006 transcription start site region 71006 721 bp downstream
Tssr71007 transcription start site region 71007 779 bp downstream
Tssr71008 transcription start site region 71008 885 bp downstream
Tssr71009 transcription start site region 71009 903 bp downstream
Tssr71010 transcription start site region 71010 1047 bp downstream
Tssr71011 transcription start site region 71011 1080 bp downstream
Tssr71012 transcription start site region 71012 1116 bp downstream
Tssr71013 transcription start site region 71013 1742 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory