rs257808534 SNP Detail

Summary

• ID
  rs257808534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:134273458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACGCCCA GCCTCACCTG
  AGCAGAGACT CTGACTTGCA AGCAGGCATT TCTTGGGGAT TTGCAAGCAA GCATTTAGGG
  GAGCTTGCTG CCTTCCACCC TAAGGGCTGC CTTGGGGCAC TTTCTCAGCA GCTGTCTGTT
  CTAGGCATGC CTTCAGCACC GTCTTGCAGG CCTAGTTCAT GTCCCAGCCC GCTGTCTTTG
  R
  AAGCTTCCCG GAGACTCCAG TCTACAAGGC CGTGTCCTTC CTTTGAACTC CAGTTACTTA
  TTTCTGTAAC AAGTAGGAGA TGGTGGCCAT GGGGGCAGGG CTGGAGAAGC CTAGGGCCCC
  TACCTCCACT CTAGGCCCAC ACCCAGGTTT GGAGGATTTT TCCCTGCGTT GTGAACACTG
  GAGCTGAGCT CCACCTGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322457602	CHEV_7_141863412	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257808534					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:134273458 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19845	CpG island 19845			52 bp distal
Dock1	dedicator of cytokinesis 1			Intron
				Noncoding-Transcript-Variant
Rr656983	regulatory region 656983			1896 bp distal
Rr656984	regulatory region 656984			1032 bp distal
Rr656985	regulatory region 656985			within coordinates
Tssr69616	transcription start site region 69616			1068 bp downstream
Tssr69617	transcription start site region 69617			1014 bp downstream