rs257811530 SNP Detail

Summary

• ID
  rs257811530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40585072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATACATTG TGATAAAACC
  TCTCTGCAGG AGAAAAGACT TACGTGGGAT GACTTGGCTA CAACGCAGGT CAAGCCCCAT
  CTACTTGGGA TTAAAATTAA CCTATGATCA ATTATTAGTC TGTATCTCTG ACATCAGTGA
  TATGCCACAT TTGAAAACAC CTTCCTACTT CTCACAATCA TTCTGTCTGA TGCTGACTCC
  R
  GTTCGGGACA GAACTTGAAG TCACTTGTGG GTCATCCCCC CCCCCCCCCC CCCCCGTACA
  TTGAGCTAAG CTTCCGTTTT TTCTTCCTCT TTCCCTTCTC TGTCTCCTGA CCACAGGGTG
  CAAGGGTACA TGCTGCTTTG GAACCAAGGG ACAACTGAGG TCAAGTATAT TTCAACCCTA
  TCACCCACGG AGGATAAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss357665467	MGP_WTSI_3_40429845	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs257811530					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357665467	MGP_WTSI_3_40429845	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40585072 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13107	CpG island 13107	328 bp proximal
Intu	inturned planar cell polarity protein	487 bp upstream
Rr67318	regulatory region 67318	1072 bp distal
Rr77556	regulatory region 77556	128 bp proximal
Tssr28946	transcription start site region 28946	84 bp upstream
Tssr28947	transcription start site region 28947	220 bp upstream
Tssr28948	transcription start site region 28948	468 bp upstream
Tssr28949	transcription start site region 28949	542 bp upstream
Tssr28950	transcription start site region 28950	625 bp upstream
Tssr28951	transcription start site region 28951	655 bp upstream
Tssr28952	transcription start site region 28952	685 bp upstream
Tssr28953	transcription start site region 28953	717 bp upstream
Tssr28954	transcription start site region 28954	759 bp upstream