rs257813204 SNP Detail

Summary

• ID
  rs257813204
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80414509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTAAAA GCCCCAGGCC
  CTAGGCGCCG GTTGCGCGGA AGTAGGAGAC CAGGCTCCCG CCCCTTCCTA ACTCCCGCCG
  GGTTGCGGAG GCCATGCAGT GGCCCGCGCA GCCTCCAGGG GGCGAAGCAC CCCAACCGAC
  AGCAGTCTGT CGGTCCGAGC TCCATCATGT TTATTCCCCA GCAGAGGCTA ACCGGTGGCA
  K
  AGGTCCTTGC TCTGGGTGTC ATCTCTACCT TCCCCACCTG CACCCCAAGC TGACTTGGTC
  AGGTTCCAGT GCTCTGCCGT CGAGTTGGCC ATGTTTCTCT AGGCCCCACT ATACTTTGTG
  TTGACACCGT GTCCCTCAAC GACAGAGGTT GAATACTCTG GGGGACCTCT GCACAAATCT
  AGCTGGACAG AAATGGACAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381021724	MGP_WTSI_10_80041420	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257813204					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381021724	MGP_WTSI_10_80041420	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80414509 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1896	CpG island 1896	within coordinates
Gm26710	predicted gene, 26710	within coordinates
Klf16	Kruppel-like transcription factor 16	1379 bp upstream
Rr402055	regulatory region 402055	within coordinates
Rr435300	regulatory region 435300	599 bp distal
Rr435301	regulatory region 435301	1178 bp distal
Rr435302	regulatory region 435302	within coordinates
Rr435303	regulatory region 435303	72 bp distal
Rr435304	regulatory region 435304	419 bp proximal
Rr435305	regulatory region 435305	1940 bp proximal
Tssr98472	transcription start site region 98472	1401 bp upstream
Tssr98473	transcription start site region 98473	1348 bp upstream