rs257819148 SNP Detail

Summary

• ID
  rs257819148
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26494027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCCCTAG CACTTGAGAG
  GGTGAGGTTA GGGCAGAGGT ATCATGAGTT CCAGGCCAGC CTGGGCTACA TAGTTATATT
  TATACTCAAG CAAAAATAGG TAAAACACAC ACACACACAC ACACACACAC ACTAGAAAAC
  ACAGAAAACC CTGACCTATA TTTTTCATGA GACAAAGTGT GTCTCAGTTG AATTATAATG
  W
  CCTAACTAAA GTATGAACAT CTTTTGTGAG TAAATACCCC AAATTCCAGT TCCTTAGAAA
  AATTTTAGTA TTAATATAAG CACCAAAAAA AACCCCAAAC AAAAGCAAAT AAAACAAAGA
  AGGAACAGAA CCAAAATCCA CCAAGTCCTA AAAATAGACT CAGAAGCAAA GTTTCTGAGA
  TACTTAATGA GGTCTGACTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385360820	MGP_WTSI_12_27128893	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257819148					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385360820	MGP_WTSI_12_27128893	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26494027 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	94 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	within coordinates
Tssr112998	transcription start site region 112998	275 bp downstream
Tssr112999	transcription start site region 112999	210 bp downstream
Tssr113000	transcription start site region 113000	109 bp downstream
Tssr113001	transcription start site region 113001	358 bp upstream
Tssr113002	transcription start site region 113002	382 bp upstream
Tssr113003	transcription start site region 113003	457 bp upstream
Tssr113004	transcription start site region 113004	517 bp upstream
Tssr113005	transcription start site region 113005	543 bp upstream
Tssr113006	transcription start site region 113006	906 bp upstream
Tssr113007	transcription start site region 113007	990 bp upstream
Tssr113008	transcription start site region 113008	1158 bp upstream
Tssr113009	transcription start site region 113009	1176 bp upstream
Tssr113010	transcription start site region 113010	1326 bp upstream
Tssr115902	transcription start site region 115902	1158 bp upstream
Tssr115903	transcription start site region 115903	828 bp upstream
Tssr115904	transcription start site region 115904	804 bp upstream
Tssr115905	transcription start site region 115905	506 bp upstream
Tssr115906	transcription start site region 115906	386 bp upstream
Tssr115907	transcription start site region 115907	327 bp upstream
Tssr115908	transcription start site region 115908	283 bp upstream
Tssr115909	transcription start site region 115909	199 bp upstream
Tssr115910	transcription start site region 115910	145 bp upstream
Tssr115911	transcription start site region 115911	97 bp upstream
Tssr115912	transcription start site region 115912	83 bp upstream
Tssr115913	transcription start site region 115913	48 bp upstream
Tssr115914	transcription start site region 115914	within coordinates
Tssr115915	transcription start site region 115915	24 bp downstream
Tssr115916	transcription start site region 115916	81 bp downstream
Tssr115917	transcription start site region 115917	127 bp downstream
Tssr115918	transcription start site region 115918	146 bp downstream
Tssr115919	transcription start site region 115919	173 bp downstream
Tssr115920	transcription start site region 115920	200 bp downstream
Tssr115921	transcription start site region 115921	505 bp downstream
Tssr115922	transcription start site region 115922	601 bp downstream
Tssr115923	transcription start site region 115923	684 bp downstream
Tssr115924	transcription start site region 115924	755 bp downstream
Tssr115925	transcription start site region 115925	770 bp downstream
Tssr115926	transcription start site region 115926	1119 bp downstream
Tssr115927	transcription start site region 115927	1163 bp downstream