rs257836585 SNP Detail

Summary

• ID
  rs257836585
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8105893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACATCGACC AACCAACACT GTTCAGTCCT
  TAACAGTCCG GAGCCAGCAA ACAATTACCT CTTGTTGCAA TTGCACCAAA AAACAAAAAA
  GAAGCCGTGA AACATCTGAA CAACCCACGT GAGTTTCACA TCCTTTCCAG GAAGCTTCAC
  M
  ACTGGGGTTG TTTCTATTCG AATCATCCAG AAAATTAAAC AATTCACTTT CCTATGAATG
  ACCTGGGTGA GGCTGTCCTG CCTAGAAACT GCCCTCTTCT ACCCCACCCC ACACACCCAC
  GCCTAGCAAT CGCACCTGAG CTACACTCAG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321459851	CHEV_5_8055893	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257836585					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8105893 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15530	CpG island 15530	305 bp proximal
Gm15730	predicted gene 15730	340 bp downstream
Rr607088	regulatory region 607088	1780 bp distal
Rr607089	regulatory region 607089	144 bp proximal
Rr607090	regulatory region 607090	808 bp proximal
Sri	sorcin	within coordinates
Tssr45106	transcription start site region 45106	779 bp downstream
Tssr45107	transcription start site region 45107	643 bp upstream
Tssr45108	transcription start site region 45108	662 bp upstream