rs257838740 SNP Detail

Summary

• ID
  rs257838740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101028368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGGCACTG AGGAGAGGTG TATGTTATAC
  AGACAACACT GGCACTAGAG ATGAGATGTG ACATGGGGAC AGACCTGAGA CAGAGCTTAG
  AGAAAAACAC CTAGGACTAC AGTTTCTTGA ACTCAGATAG CATCCTTTGG CCCACATGGG
  Y
  AAAGCATCAC AACTGGCAAA GGACAACCCA GAGGAACACA GCTTGGCTCT AACAGAGACA
  AACCTCGAGG CTTAGGCTGA CAGCATCGTT TCAGCACAAA GCTTATGTTG TCCGTGCGCA
  GGATCTGCTT CTTGAGGTGG TTCATGAGGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321229017	CHEV_4_100843776	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257838740					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101028368 () rs orientation: forward

Symbol	Name	Function Class
Jak1	Janus kinase 1	Intron
Rr596081	regulatory region 596081	1590 bp proximal
Tssr42542	transcription start site region 42542	945 bp downstream