rs257846962 SNP Detail

Summary

• ID
  rs257846962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184544054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCGCAC CCCCCACCCA
  CACGCCCCTC TTTTCCCTGC GTCCTAATGT GGACTTGCAC TGCCAGGTAT CTCTTCCGAA
  GGCTACCGCA TCTTGAACAA CAAAGACAAG ACCATCAAGG TACCTTGGGC GCCTTAGGCA
  CCTGTTTGGT GTGTCAAGCT GCTAAAATGT CATATTTATT CAAGACTGTT CTAACCAGAG
  Y
  ATTTTCTCTA CTAAGTTAAG GCAGAGAGAC TGGACTTTGT ACTGAAACAA GGGCTGGGGA
  TTTTACAGCC AAGGGGCAGT GCGGGGATGA ACCTGGCTGC AGGAATAAAG ATTTCTCTGA
  AGAGAAGCTT GTGCCCTTCC CTCTAGCCAA CAGACTCTTG AAACAGTGGA CCAAGAAACT
  GGGACTCCCC CGACTTCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169575	CHEV_1_186635736	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257846962					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184544054 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	520 bp distal
Gm70890	predicted gene, 70890	67 bp upstream
Mtarc1	mitochondrial amidoxime reducing component 1	660 bp upstream
Mtarc2	mitochondrial amidoxime reducing component 2	1211 bp downstream
Rr425290	regulatory region 425290	within coordinates
Rr425291	regulatory region 425291	78 bp proximal
Rr425292	regulatory region 425292	491 bp proximal
Rr425293	regulatory region 425293	639 bp proximal
Tssr15650	transcription start site region 15650	866 bp upstream
Tssr15651	transcription start site region 15651	694 bp upstream
Tssr15652	transcription start site region 15652	654 bp upstream
Tssr15653	transcription start site region 15653	593 bp upstream
Tssr15654	transcription start site region 15654	554 bp upstream
Tssr15655	transcription start site region 15655	543 bp upstream