rs257847536 SNP Detail

Summary

• ID
  rs257847536
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123059352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTAGTGGA TGTGTGTCAT
  TGGCAGCAGG ATTTGAGGTT TCAAAAGGCC AGGGGCATTT CCTGTGCTTC TCTTTCTTCC
  TTGTGCTCAG GGATCGAGAT GTGAGCTCCC AGATACTGTT TTAGCACCGT GCCTGCCTGC
  CTGCCTGCCT GCCACCATGT TCTCTGACAT GATGGCTATG AGCTCTACTC CTCTGAAACT
  R
  TAAATCCTCA GTAAAAACAT TCTCTAAATT GCCTTGGTCA TGGTGTCTTA TCTAAGGAGG
  TGGAGGAGGA AGAAGAGGAG GTGGAGGAGG AAAAGGAGGG GGAAGAGGAA GAGGAAGAGG
  AAGAGGAAGA GGAAGAGGAA GAGGAGGAGG AGGAGGAGGA GGAAGAAGAA GAAGAAGAAG
  AAGAAGAAGA AGAAGAAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359522529	MGP_WTSI_3_122968621	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257847536					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359522529	MGP_WTSI_3_122968621	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123059352 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13776	CpG island 13776	1242 bp proximal
Gm56815	predicted gene, 56815	within coordinates
Gm66521	predicted gene, 66521	within coordinates
Rr77168	regulatory region 77168	1048 bp proximal
Sec24d	SEC24 homolog D, COPII coat complex component	1752 bp upstream
Tssr31540	transcription start site region 31540	916 bp downstream
Tssr31541	transcription start site region 31541	885 bp downstream
Tssr31542	transcription start site region 31542	1478 bp upstream
Tssr31543	transcription start site region 31543	1505 bp upstream
Tssr31544	transcription start site region 31544	1742 bp upstream