rs257849846 SNP Detail

Summary

• ID
  rs257849846
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:139734500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTC GGATGAGCGA TTTAGGGGCC
  K
  TGACCGGCCA AGCGGAAAGG TGCGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322470171	CHEV_7_147340486	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257849846					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:139734500 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19899	CpG island 19899	854 bp distal
Cpgi19900	CpG island 19900	within coordinates
Sprn	shadow of prion protein	within coordinates
Tssr75508	transcription start site region 75508	55 bp downstream
Tssr75509	transcription start site region 75509	125 bp downstream