rs257853707 SNP Detail

Summary

• ID
  rs257853707
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91051333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCTTTTG ACACATCTCC
  CCCCCCCCCC CCCACGGCCC CAAGTCGGGT AGAAGGATAT GACACAAAAT GTGATTTACT
  CGTGCTCAGT ACACCGCAGG AACAATGCAC TCTTGTGTAC AGCCTGAGAT GACTAAATTT
  CAACGGTGTA CTTACGCAGA CGTAAATAAA TCTTCATCTA GTACTATCTA TGAGTATGTA
  R
  CTAATAGAGA AGCAATCCCC CATCCCCCGC GCGTTCACGC TTGAACACAC ACACACCTTA
  ATTTCTTCAG TCCTAATGAC TAAAGTTCCC CAAACTGTTA GGTCTCCACT GATGACATAG
  CTCAGTAACC ACTGTCCTCT AGCAGGTGGT CACTTCAGCG CAGACATCAC TTCCTTCCTT
  TTGAGGATTT GGGGAAGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365847478	MGP_WTSI_5_91332500	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257853707					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365847478	MGP_WTSI_5_91332500	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91051333 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	425 bp upstream
Gm73232	predicted gene, 73232	270 bp upstream
Rr614420	regulatory region 614420	281 bp distal
Rr614421	regulatory region 614421	412 bp distal
Rr614422	regulatory region 614422	within coordinates
Tssr47224	transcription start site region 47224	213 bp upstream
Tssr47225	transcription start site region 47225	335 bp upstream
Tssr47226	transcription start site region 47226	390 bp upstream
Tssr47227	transcription start site region 47227	595 bp upstream
Tssr47228	transcription start site region 47228	638 bp upstream
Tssr47229	transcription start site region 47229	665 bp upstream
Tssr47230	transcription start site region 47230	690 bp upstream
Tssr47231	transcription start site region 47231	710 bp upstream
Tssr47232	transcription start site region 47232	875 bp upstream
Tssr47233	transcription start site region 47233	892 bp upstream
Tssr47234	transcription start site region 47234	964 bp upstream
Tssr47235	transcription start site region 47235	1714 bp upstream
Tssr47236	transcription start site region 47236	1734 bp upstream
Tssr47237	transcription start site region 47237	1783 bp upstream
Tssr47238	transcription start site region 47238	1789 bp upstream
Tssr47239	transcription start site region 47239	1849 bp upstream
Tssr47240	transcription start site region 47240	1861 bp upstream
Tssr47241	transcription start site region 47241	1876 bp upstream
Tssr47242	transcription start site region 47242	1913 bp upstream
Tssr47243	transcription start site region 47243	1936 bp upstream
Tssr47244	transcription start site region 47244	1970 bp upstream
Tssr47245	transcription start site region 47245	1990 bp upstream
Tssr51810	transcription start site region 51810	331 bp upstream
Tssr51811	transcription start site region 51811	277 bp upstream
Tssr51812	transcription start site region 51812	727 bp downstream
Tssr51813	transcription start site region 51813	759 bp downstream
Tssr51814	transcription start site region 51814	1733 bp downstream
Tssr51815	transcription start site region 51815	1767 bp downstream
Tssr51816	transcription start site region 51816	1801 bp downstream