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rs257857461 SNP Detail
Summary
  • ID
    rs257857461
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr8:13259247 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAATCCTGGG TGGTGTCAGG
    CCTCCGGAAA ATGCAGAATT GTCAGCCTCA CCCTGTTCCT TGAAGAAGTC ACCTGCTCCT
    CCCCACAGGG AACATCTGTG CCAAGAGGCT CCTCCCCCAT GGAGAATGCG ACTCTCCCTG
    CCTCTCCCCT GTCAGCTGGC CAGAGCAGCC TGGAGAGCAT CCGTCAGCTT GCCAGCTGCA
    Y
    GCCTGCCCTT CTTTCTCAAT CTAGCTTAAG TTTAATTTAA TATTTTTGAT TTGCATAGAA
    AGTAACAGGT GCCCTCGTGA CATTTTTCAA ACATGCTTGC TTTTGGTTGA CCAACCTCTC
    CCCCTGCTCC TGCCCATCTC CCTGATTTGG GTTTATTTCT TTGTTTTACA TTCATTTGTG
    TTATTATTTA TTGTGTGCCT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss322505110 CHEV_8_13209247 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs257857461 SNP C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr8:13259247 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm63815 predicted gene, 63815 1186 bp downstream
Rr381722 regulatory region 381722 within coordinates
Rr659882 regulatory region 659882 within coordinates
Rr659883 regulatory region 659883 584 bp distal
Rr659884 regulatory region 659884 464 bp distal
Rr659885 regulatory region 659885 273 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory