rs257859170 SNP Detail

Summary

• ID
  rs257859170
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166627203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCATGGCA GCAAGATCAG
  CCCTGCCAGT GAGCAGGCGG GGGCAAGGGG GCCTGGGAGG CGGGGGCGGG CGAGTCGGGC
  TGGAGCAAGG GTGAAGGGAA GATCAGCTCT GCCAGAGAGC AGGCTGGAGC GAGGGGACAT
  GGGGGGGTGC AGAGCAAGCT GGCCGGAGGA GGGGGGTTAA AGGGGGGCGG GGGGGGGAGA
  R
  ATCAGCTCTG CCAGTGAGCA AGCCAGAATG AGGGCGGGGG TGGGGTGGTG TGGGGTGGTG
  CAGAGCAAGC CGGGCGGGCG GGCCGGAGCA AGAGGGAGAG GGGAAAAAAA AGATCAGCTC
  TGCCTATGAG AGCTGGAATG GGCGCTGAGC TGGTTGATCA CAGTACCACA GTCAGGAAGC
  AAAGACCATT GATGGACCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356491887	MGP_WTSI_2_166610783	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs257859170					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356491887	MGP_WTSI_2_166610783	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166627203 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12724	CpG island 12724	929 bp proximal
Gm74818	predicted gene, 74818	721 bp downstream
Rr570378	regulatory region 570378	687 bp distal
Rr570379	regulatory region 570379	855 bp proximal
Rr570380	regulatory region 570380	1481 bp proximal
Tssr27711	transcription start site region 27711	1470 bp downstream