rs257859784 SNP Detail

Summary

• ID
  rs257859784
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79596691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACATACAAA GAGGATTTGT CTCTGACAAT
  ACCATGGCCT GAAGGTCTAG ACATTAGGGG TAGGATGGGG ACAGGAGCCT TGTACTCTCG
  GATACAGCCT TGACTCCAGC CCCTCCCTGT GCATTCCTGG TGAGAAAGCA CCCCTAGGTG
  S
  GGCTCCTCTT TTCTGTAGTA GCTGGCACAG AGAATTCTGC CGCCAAAGGA GTGAGGGCCA
  GGAGACAAAA CAAAGGCAGC AGAAGAGGTT CAAGGTACAG AAAGGGTTAA CATACAGACA
  CTGGGGAAGT GTGAACTTCC CAAAAGGTGA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323760573	CHEV_11_79519367	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257859784					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79596691 () rs orientation: forward

Symbol	Name	Function Class
B230207N12Rik	RIKEN cDNA B230207N12 gene	1415 bp upstream
Cpgi3370	CpG island 3370	771 bp distal
Gm11205	predicted gene 11205	851 bp downstream
Gm74173	predicted gene, 74173	1313 bp upstream
n-TTcgt3	nuclear encoded tRNA threonine 3 (anticodon CGT)	1144 bp downstream
Rr402778	regulatory region 402778	1145 bp downstream
Tssr109524	transcription start site region 109524	1348 bp upstream