rs257870504 SNP Detail

Summary

• ID
  rs257870504
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72534558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAAATTC AGAAGATGGC
  ATTGCATCCC CTGAAAGTGG AGCTGTAGGC AGTTGTGGGC CACTTTGTGG GTACTGAGAA
  TTGAACCTTG GAATTTTTTT TGAGACACAG ACAGACAGGC AGAGACTGAA ACTTGTGTAG
  CCCTGGCTGT TCTGGAACCC ATTCTGTAGA CCAGGTCTCA AATACACAGA CATCTATCTG
  Y
  GTCTGTGTCT TGAGTGCCGA GGTCAAGCCT GTGCCATCAC TCACGGCATA GTTTCCCTGC
  CTGTGGGGAC AGTTTCTCAG TGGTGGGCAG GACAGAGGCA GCTGGTTGTG ATGAGCCTGT
  CTGGCTTCTC TGCAGAACAT CTTTGCCTGG TGTGGTGGAA AGTCCAACAT CCTTGAGCGC
  AACAAGGCGA GGGACCTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368751819	MGP_WTSI_6_72507569	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	T	T	C	C	C	C	T	T	C	C	C	C	T	T	T	T	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257870504					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	T	T	C	C	C	C	T	T	C	C	C	C	T	T	T	T	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368751819	MGP_WTSI_6_72507569	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72534558 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57142	transcription start site region 57142	1772 bp downstream
Tssr57143	transcription start site region 57143	1746 bp downstream
Tssr57144	transcription start site region 57144	1457 bp downstream
Tssr57145	transcription start site region 57145	1417 bp downstream
Tssr57146	transcription start site region 57146	1398 bp downstream
Tssr57147	transcription start site region 57147	232 bp downstream
Tssr57148	transcription start site region 57148	1098 bp upstream
Tssr57149	transcription start site region 57149	1191 bp upstream
Tssr61469	transcription start site region 61469	214 bp downstream