rs257871725 SNP Detail

Summary

• ID
  rs257871725
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25111157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTAAAGT TGAGCTGGTT
  TGAAAACACA GGACCTGTTG GGGATCAGCA GCCTAGTATG GTTGGAGCAT AAGTGCATCT
  TTGTGAATGA AAGAAAGTGG ACTGGAAAGG TGTGTTGTGA CTAGAGCTTT GAGTTCATGG
  GGAGGACTCT AGCCCTGGTG CCCATATAGT GATAGAGAAG CCTTCCCTTC CAGAGTGGCC
  R
  CTATGGGCCC CAGGACTGAA GAACTCAGAG AACTTTCCCT ACAAAGGAAA GAAGTTGGAC
  ATTGCCAGAG GCAGGTGATC CTGGATTTAG GATCACATGA TGCTGAGTAT GCCACAGAGT
  ACCTCACCCA CAGGAGAAAG GTACATGGAT AGAGATGATC TTGCTTCTGT GTGGTGGCTC
  TGTGAAGAGC TGGGAAACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322121676	CHEV_7_26196751	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257871725					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25111157 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	within coordinates
Rr155536	regulatory region 155536	1957 bp distal
Rr160903	regulatory region 160903	356 bp distal
Rr164493	regulatory region 164493	1973 bp proximal
Rr170192	regulatory region 170192	44 bp proximal
Rr170193	regulatory region 170193	845 bp proximal
Tssr2143	transcription start site region 2143	1065 bp downstream
Tssr2144	transcription start site region 2144	1215 bp downstream
Tssr2145	transcription start site region 2145	1233 bp downstream
Tssr2146	transcription start site region 2146	1251 bp downstream
Tssr2147	transcription start site region 2147	1294 bp downstream
Tssr71243	transcription start site region 71243	1075 bp downstream
Tssr71244	transcription start site region 71244	1100 bp downstream
Tssr71245	transcription start site region 71245	1113 bp downstream
Tssr71246	transcription start site region 71246	1125 bp downstream
Tssr71247	transcription start site region 71247	1170 bp downstream