rs257871989 SNP Detail

Summary

• ID
  rs257871989
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72887419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACCACAC AACCCTTCCC
  TGGAGAGACA TTTGTCAGCT AGGCTGAGAC TGGGAACTAG GGGCTGCTTT GAGTGTTTGT
  GTGCACACAG TTGGCTCTAT GAGAGTGATT CTCAATGGCA GGTGGCTGCC TGCCTTGCAG
  TCCCTTGCCA GCTGTGCCCC AGCCCAGGGA TCTTGTGGTA GTAGTTTTTT AAACCTCAAC
  K
  AGTCTGCCAT GATCGGACCA TAAAGGAAGG ACTTAAACTT GGGGTTAGTG GAGAGTGAGC
  ACGATATTTT CTGATGGATC CAGGGATGAC CTACTCCCCT GTTGAGGGCC TTGTGTCTGT
  CTTCATCCTT TGGTTGCAGC TTGGAGGGTG AGGGAAGAAC TGAGCTTGGA TCTCCCCATT
  TCTCTCTGCA GTCACACAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350087056	MGP_WTSI_1_72894834	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257871989					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350087056	MGP_WTSI_1_72894834	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72887419 () rs orientation: forward

Symbol	Name	Function Class
Igfbp2	insulin-like growth factor binding protein 2	within coordinates
Tssr7321	transcription start site region 7321	819 bp upstream
Tssr7322	transcription start site region 7322	848 bp upstream
Tssr7323	transcription start site region 7323	891 bp upstream
Tssr7324	transcription start site region 7324	940 bp upstream
Tssr7325	transcription start site region 7325	955 bp upstream
Tssr7326	transcription start site region 7326	985 bp upstream
Tssr7327	transcription start site region 7327	1014 bp upstream
Tssr7328	transcription start site region 7328	1317 bp upstream
Tssr7329	transcription start site region 7329	1352 bp upstream
Tssr7330	transcription start site region 7330	1366 bp upstream
Tssr12178	transcription start site region 12178	855 bp downstream
Tssr12179	transcription start site region 12179	898 bp downstream
Tssr12180	transcription start site region 12180	962 bp downstream
Tssr12181	transcription start site region 12181	983 bp downstream
Tssr12182	transcription start site region 12182	1026 bp downstream
Tssr12183	transcription start site region 12183	1047 bp downstream