rs257872239 SNP Detail

Summary

• ID
  rs257872239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:97444396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAACATG GTCAGGAAGG
  AAAACACATG AAATGCCAAC TATTACATGA TTGTGTTTAT GTGCTATAAT CAGAAAAGGT
  AGATACACTG AGATAAAAAG GAAACTTACA GTTATCAGGT ATTGGGTTGA GATGCAGATT
  AACTCTAAAC ACTGTCCAGT AGTGAGAGAG GTCTAAATGT GATTTATGGC AGTGGCTAAT
  R
  GTGTCTAGTA AACTTACTAA AACCCACTGA ATTGGAGACT TAATACCATC AATTTTACGG
  TGTATAAAAT TTACCTCAGT GAGGTGGTTT AAAACAAATA CCACATGAGA TGAGCTGGAG
  AGGCTAGAGG GAAGGAAGTT GTCTGAGAAA AGCCTTGCTT TGCTTGCTGG TGGTAGCTGA
  GAGGAATTGT GAAAAATTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324130774	CHEV_12_98716347	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257872239					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:97444396 () rs orientation: forward

Symbol	Name	Function Class
Rr387670	regulatory region 387670	1445 bp upstream
Rr470847	regulatory region 470847	945 bp distal