rs257875697 SNP Detail

Summary

• ID
  rs257875697
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103223466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATCCTGC CTGAGACAAC
  AAAGTATTGT GTTACTGTAA GATAGGGTCT TCTAAAGATA ACTTGTCTTT TCAGGGTAGA
  GCATCAGGAG TCCTAAGCCA GGTCTGCAAA TTCTCTCTAA GGAGTCTATA TACTTTTGAG
  TAAGGAAATT ATGTCCTTTC TTTCCTAATT GCTGATTGCT AGGGTACTCC TGTAATCCTA
  R
  CACTTGGGAG GCAGGAGAAG AGCAAGAGGT CAGAGCTAGC CTATGAAACT TTGTCCTTTT
  TCTTTTCTTT CTTTCTTTTT TTTAAACTAA TAATGGGTTG AAGAGGCCGC CCAGGGGTAA
  AGGCACCTGC GCTGCTCTTC CAGAGAACTC AGATTTAATT CCTATCATCA ACATCTGTAA
  ATCTACTTCC AGAGGATCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323160929	CHEV_9_103248597	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257875697					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103223466 () rs orientation: forward

Symbol	Name	Function Class
Rr198506	regulatory region 198506	466 bp distal
Rr207098	regulatory region 207098	527 bp proximal
Topbp1	topoisomerase (DNA) II binding protein 1	within coordinates
Tssr91191	transcription start site region 91191	1453 bp downstream