rs257883006 SNP Detail

Summary

• ID
  rs257883006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123621655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTTTGGA TGAAAAGGCT
  GAGTCTTGTA CCTTGTTCTT AGGGGCTCTG GGACCTGAGA GTAACGGCTG CATGGAGCCA
  AGCGCACTGT GGAGCCCAAG GCCTCTGCCA AAGCTGCAGA ACTGCTGAGC TGGGGGCACA
  GCTGATTTTC TTTCTTTTGC TTCTAATTTT TTAATATTTA AAATTTTGTG GATGAGTGTG
  Y
  GTGTTCATGT TTAATGAGAT AGGTGAGGAG GAGTAGTGTT TCCTGTGGAT GATGAAGAGC
  TAATTAGAGT TCAGGTACTG ATGCTATGGG AAATCGCTTC CATCGTAGAT CACAGGCCGG
  TCAACAGTCA GGTGGTAAAG CACTTTTTTG GAGATAAATC TGAAGAAATA GAAACGGAGA
  ATGAATGTGT TACTTTTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323234334	CHEV_9_123701708	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257883006					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123621655 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	524 bp upstream
Tssr92158	transcription start site region 92158	518 bp upstream
Tssr92159	transcription start site region 92159	494 bp upstream
Tssr92160	transcription start site region 92160	119 bp upstream
Tssr92161	transcription start site region 92161	98 bp upstream