rs257885852 SNP Detail

Summary

• ID
  rs257885852
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130489094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACCCTGTC TCAGAAAACC AAAAAAAAAA AAAAAAAAGG
  AAGGAAGGAA GGAAGGAAGG AAAGAAAGAA AGAAAATGGA GACAGAGAAG AGAGTAGAGT
  R
  GGGAGCAGGA CACCAGGTCA GGGGTGGGGC TGAGGGAGTC TGGAGTCGGG CGCAGGCTTG
  GCTATGCAGC AACAGGTTTG TCAGTGTAGG GAAGTGGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320966029	CHEV_3_130398363	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257885852					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130489094 () rs orientation: forward

Symbol	Name	Function Class
Gm65113	predicted gene, 65113	847 bp downstream
Ostc	oligosaccharyltransferase complex subunit (non-catalytic)	472 bp downstream
Rr398016	regulatory region 398016	1106 bp downstream
Rr585194	regulatory region 585194	1092 bp distal
Rr585195	regulatory region 585195	1211 bp distal
Rr585196	regulatory region 585196	376 bp distal