rs257893266 SNP Detail

Summary

• ID
  rs257893266
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3123571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAAAGCT TGAACAAGTA
  AACTCAAGGT CATGACAGTA ATACAAACCA AGGAAGGCAC TGGAAACAGG AAAGCCACGG
  AGAATACCAT GGACACTGAT GCTGGTTCTT TCATGTCCTT GTCACCTCCT ATGGCTACAA
  TACAACAATG ACCAGAACCA AGTTGAGATG GGAAGGGTTT ATTGCACCTT CCAGGACACA
  R
  TGCAGGGTCA AGGTGAGCAA GCCAGAAAGC AGACTTCCTC CACGGTCTCT ACTCTGCTCC
  TGCCTTGCGC TCCTTCTGCA TTGGCACCCT TGACAAAAGC CTCCCCTAGT CAGCCTTGGT
  CAGCATTTTA TCACAGCAGG GGAAGAAACT AGGACCCTTG ACAAAGTCAA TAAAACAGGT
  AAAGCTCGAG GCAACTGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	SPRET/EiJ
ss382237247	MGP_WTSI_11_3073574	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	SPRET/EiJ
rs257893266					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382237247	MGP_WTSI_11_3073574	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3123571 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	990 bp distal
Cpgi2458	CpG island 2458	within coordinates
Rr441481	regulatory region 441481	1121 bp distal
Rr441483	regulatory region 441483	1355 bp distal
Rr441484	regulatory region 441484	621 bp distal
Rr441485	regulatory region 441485	within coordinates
Rr441486	regulatory region 441486	402 bp proximal
Rr441487	regulatory region 441487	1607 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	774 bp upstream
Tssr106449	transcription start site region 106449	242 bp upstream