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rs257901016 SNP Detail
Summary
  • ID
    rs257901016
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:57386983 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTGATTCAGT GTGGCCACAC
TGGAAAGGGG GGGGGGACGG GATGGGGGAG ATCCAGTGAC CTTCAGGTCC ATCTTTCCAA
AGTACAGACT GTGGCCCCAG TATGCATGTT CCTGGTGTGC AAGTGGCTTA TCTTACACTA
CAGAGTTGCT CTGGTCTAGC CTGGTCTGTT TGGCTCTGCA ATCCCTGTAC CCCACCACTC
Y
AGGAGCTGAT CTTCAGTGGC TGGTGGGCCC CTCCACTCCC TAGCTGCACT CAGAGAAGAA
ACTAAATCAA ACAGAAACCA CACCAAAGCA ATGACTCATT TATTGATGGA GGGTCAGCAG
GGGAGAGCAG GGTGGGGTGG ATTTTAGGGA GGGGCTCTCT CACCCCAGGC AACAGGCCTC
TCTTTTTCCT CGTCCTTCAG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss398570133 MGP_WTSI_17_57219406 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257901016 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss398570133 MGP_WTSI_17_57219406 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:57386983 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi9393 CpG island 9393 1106 bp proximal
Dennd1c DENN domain containing 1C 1465 bp upstream
Gm56907 predicted gene, 56907 within coordinates
Rr529265 regulatory region 529265 1484 bp distal
Rr529266 regulatory region 529266 1392 bp distal
Rr529267 regulatory region 529267 786 bp distal
Rr529268 regulatory region 529268 within coordinates
Tssr5182 transcription start site region 5182 236 bp upstream
Tssr145371 transcription start site region 145371 1374 bp downstream
Tssr145372 transcription start site region 145372 264 bp upstream
Tssr145373 transcription start site region 145373 611 bp upstream
Tssr145374 transcription start site region 145374 705 bp upstream
Tssr148878 transcription start site region 148878 1566 bp upstream
Tssr148879 transcription start site region 148879 1525 bp upstream
Tssr148880 transcription start site region 148880 1499 bp upstream
Tssr148881 transcription start site region 148881 1464 bp upstream
Tssr148882 transcription start site region 148882 379 bp downstream
Tssr148883 transcription start site region 148883 474 bp downstream
Tssr148884 transcription start site region 148884 547 bp downstream
Tssr148885 transcription start site region 148885 624 bp downstream
Tssr148886 transcription start site region 148886 651 bp downstream
Tssr148887 transcription start site region 148887 675 bp downstream
Tssr148888 transcription start site region 148888 702 bp downstream
Tssr148889 transcription start site region 148889 739 bp downstream
Tssr148890 transcription start site region 148890 835 bp downstream
Tssr148891 transcription start site region 148891 953 bp downstream
Tssr148892 transcription start site region 148892 973 bp downstream
Tssr148893 transcription start site region 148893 1187 bp downstream
Tssr148894 transcription start site region 148894 1259 bp downstream
Tssr148895 transcription start site region 148895 1663 bp downstream
Tssr148896 transcription start site region 148896 1725 bp downstream
Tubb4a tubulin, beta 4A class IVA 78 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory