rs257902172 SNP Detail

Summary

• ID
  rs257902172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:12305071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAATTTA TTGCCCATCA
  CGCCGTCATT TGACCTGACA TATTTGCATC TTTGAAAAAA AAGAGGGTAT TCTCTAATAA
  TATATGTTAT TTGAATGCTA ACATTTGGGT GCTACAAGCT AAAACACCGA GTGATGGTGT
  TTTCAAAACA CCCCTTTTAA ATTATTTTCT TAGGATCCAA GTTAAAAACA GCAGATGAAA
  Y
  GGTATTTTCC CTTTAATTAA ATAAGAAACA TCTGTCTGGG GGATTTTTGG AAATGAATAT
  AATCCATCCA CACTCTGCCT GTAGTATTTT GCATCTAATG TCCAGTATTT TGAAAGAAAA
  TTCTTTCTGT AAAGAATTAG AATGTCAAGC ACCCCAGGTT GCAGTCTGGA TCTACTACAG
  GGCAAGTCTC ACCTCCGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353116083	MGP_WTSI_2_12221887	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	C	T	T	C	C	C	T	T	T	T	T	C	C	C	T	T	T	C	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257902172					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	C	T	T	C	C	C	T	T	T	T	T	C	C	C	T	T	T	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353116083	MGP_WTSI_2_12221887	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:12305071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11209	CpG island 11209	1169 bp proximal
E030013I19Rik	RIKEN cDNA E030013I19 gene	986 bp upstream
Itga8	integrin alpha 8	within coordinates
Tssr16173	transcription start site region 16173	418 bp upstream
Tssr16174	transcription start site region 16174	534 bp upstream
Tssr16175	transcription start site region 16175	759 bp upstream
Tssr16176	transcription start site region 16176	948 bp upstream
Tssr16177	transcription start site region 16177	969 bp upstream
Tssr16178	transcription start site region 16178	995 bp upstream
Tssr16179	transcription start site region 16179	1043 bp upstream
Tssr22663	transcription start site region 22663	790 bp downstream
Tssr22664	transcription start site region 22664	1634 bp downstream
Tssr22665	transcription start site region 22665	1654 bp downstream
Tssr22666	transcription start site region 22666	1674 bp downstream
Tssr22667	transcription start site region 22667	1728 bp downstream
Tssr22668	transcription start site region 22668	1736 bp downstream