rs257905218 SNP Detail

Summary

• ID
  rs257905218
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:36006416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACCCAGT CAAGTTTATT
  GTTTATGTGT TTGCAGTTCA ACAAGGGCTA GTTATATCAT GTTAGGCATT TTTATTACCT
  GGTTATTGTT TTCATTTGGA CTTTTAATCT GAAATGAATA CAAACTAGAA ATGGAGGGCA
  CACCAGTGAT CCAGATCTTG AGGCTGGAAG ACATAGGCTT TTGAGTCATA TCTTGAAGCA
  K
  GGTGGCCATG AAAAGCTTAA GTCCAGGCAT AGTGGTACAT GCCTCTAATC CTTGGAGACA
  GAGACAAACA GATCTATGAG TTAGGAGGCA GCCTGATACA GAACAGATGC CAAGTAAATG
  AAGGCTTTGG TCCAAGTATG GCGGACTATG ACTTTTATCC CAATATTTGA GAAACAGAGG
  AATGTAAATC TGAGTTCAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321084829	CHEV_4_35953449	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257905218					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:36006416 () rs orientation: forward

Symbol	Name	Function Class
Lingo2	leucine rich repeat and Ig domain containing 2	within coordinates
Tssr41223	transcription start site region 41223	409 bp upstream