rs257905390 SNP Detail

Summary

• ID
  rs257905390
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19875824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTATAAA AAAATTTTAA
  AAATTCATAC TTCCGATACT TAATGGCATG GAATAAATGT TCCCATTTCA AAATTAAAGA
  ACAGAAGGAT ATAAAAGAAA TATTGAAACT CCAAAAGAAA AGTACCAATC ATCGTTTCCC
  CATATTCAGA ATAATTTGAA CTCCAATGAC TTTTGGCATT CCTGCCTCTC CAGATCTGTG
  K
  CATTCAGCAC CTGTCATCTC TCTCTCTTGG ACTGGTTTCC CTCTGTGTCT ATAACTTTCT
  TCAGGAGATA TCCTGCAACT CTGGCATCTA CCGCATTCTA GAATGTCCAT CAGAACTTGA
  TCTTTCCTTT CACATAATTG TCTCTCAGAA CCTTGTGTGA GGAATATAAC CCTTCCTGGA
  ACTGCTTAGC CTCAGTAGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360789916	MGP_WTSI_4_19802971	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257905390					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360789916	MGP_WTSI_4_19802971	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19875824 () rs orientation: forward

Symbol	Name	Function Class
Atp6v0d2	ATPase, H+ transporting, lysosomal V0 subunit D2	1014 bp downstream
Gm68467	predicted gene, 68467	147 bp upstream
Tssr41030	transcription start site region 41030	1305 bp downstream
Tssr41031	transcription start site region 41031	1370 bp downstream
Tssr41032	transcription start site region 41032	1387 bp downstream
Tssr41033	transcription start site region 41033	1426 bp downstream
Tssr41034	transcription start site region 41034	1467 bp downstream
Tssr41035	transcription start site region 41035	1502 bp downstream
Tssr41036	transcription start site region 41036	1529 bp downstream
Tssr41037	transcription start site region 41037	1651 bp downstream
Tssr41038	transcription start site region 41038	1717 bp downstream
Tssr41039	transcription start site region 41039	1729 bp downstream
Tssr41040	transcription start site region 41040	1771 bp downstream
Tssr41041	transcription start site region 41041	1798 bp downstream
Tssr41042	transcription start site region 41042	1805 bp downstream
Tssr41043	transcription start site region 41043	1834 bp downstream
Tssr41044	transcription start site region 41044	1922 bp downstream
Tssr41045	transcription start site region 41045	1947 bp downstream
Tssr41046	transcription start site region 41046	1983 bp downstream