rs257905886 SNP Detail

Summary

• ID
  rs257905886
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88889280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCACTGG TAGGCTGGAC
  CAGGTCTGGA CTGGCACTTA GATACAAATA TTTTTGCCTT CTGTTTTAAC TCTGTTCTCA
  CTTCAGAACG GGGAAGGTGG ACTTGAGGGG TTTGCTGGGT CTCTTTTTTC TGTTTTCCTC
  TTTTAAGTAG GCTCATTTAA TTGGCTTAAG GACCGGTGGC TGGAGCTGAC TTGGGGCAAA
  R
  GTTGTGACAC CCAACTTTTG TAATATTAGG TTTTGTTGTT GTTGTTTTAA AGATCATCTA
  CCATAAAAGG AACACCAGAT CTGAATGGAT GACCATAGGG TCCTGCCTTT AGGGCTTGGG
  AGGAGATTTG TCAGAGCCCA CCATCAGGAA AGAAGAGGGA GCTGCATACA AAGGCAGCAC
  AGCTGGAGGG AAGGGGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384183729	MGP_WTSI_11_88859768	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257905886					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384183729	MGP_WTSI_11_88859768	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88889280 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	643 bp proximal
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	153 bp downstream
Rr402858	regulatory region 402858	811 bp upstream
Rr454272	regulatory region 454272	1871 bp distal
Rr454273	regulatory region 454273	1528 bp distal
Rr454274	regulatory region 454274	952 bp distal
Rr454275	regulatory region 454275	86 bp proximal
Rr454276	regulatory region 454276	858 bp proximal
Rr454277	regulatory region 454277	1454 bp proximal
Trim25	tripartite motif-containing 25	922 bp upstream
Tssr104062	transcription start site region 104062	931 bp upstream
Tssr104063	transcription start site region 104063	988 bp upstream
Tssr110061	transcription start site region 110061	1921 bp upstream