rs257912553 SNP Detail

Summary

• ID
  rs257912553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128581172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAGAG AGAAGAAAAA
  AAAAGAAGAG AAAGGAAAAG AAAAGAAAAA AAAAAAACCG AAAGAAACAA AAGGCCCTCT
  AGTGGAAACA GAAGTAAGTA GTCTTCAAGT ATTTGGAGAC AAAGCTGTTG AAGCAACTCT
  CTAGAGTAGT GGGGTTTGCT GCTGCTGTTG TTATTTAAAC TTTAGATTCA GATCGGGAGT
  Y
  GGAGAGTGAC CTGTCTCTGT TCTGCTGTCC TTTTCAGGTT TGTTCTGGTT TGCTTGCATC
  CTGACCCTTC ACTGCTTTGT TTTTGTTTTC ATTTTTCCTC TTCCTCCTCC ATCACTGTCA
  CCACCATGCT GCAGATGAGC TTCAGTGCCT GGAACGTGCT TCTCCGGTGC TGCACCACGG
  ATCTATACCG CTACCCCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382210071	MGP_WTSI_10_128182359	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257912553					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382210071	MGP_WTSI_10_128182359	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128581172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	1080 bp distal
Dgka	diacylglycerol kinase, alpha	448 bp upstream
Gm31504	predicted gene, 31504	within coordinates
Gm66065	predicted gene, 66065	666 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr385480	regulatory region 385480	1748 bp downstream
Rr402364	regulatory region 402364	354 bp downstream
Tssr96440	transcription start site region 96440	481 bp downstream
Tssr96441	transcription start site region 96441	280 bp downstream
Tssr96442	transcription start site region 96442	69 bp downstream
Tssr96443	transcription start site region 96443	1154 bp upstream
Tssr99941	transcription start site region 99941	1458 bp upstream
Tssr99942	transcription start site region 99942	1393 bp upstream
Tssr99943	transcription start site region 99943	1331 bp upstream
Tssr99944	transcription start site region 99944	1308 bp upstream
Tssr99945	transcription start site region 99945	1218 bp upstream
Tssr99946	transcription start site region 99946	1194 bp upstream
Tssr99947	transcription start site region 99947	1051 bp upstream
Tssr99948	transcription start site region 99948	1021 bp upstream
Tssr99949	transcription start site region 99949	416 bp upstream
Tssr99950	transcription start site region 99950	245 bp upstream
Tssr99951	transcription start site region 99951	222 bp upstream
Tssr99952	transcription start site region 99952	218 bp upstream
Tssr99953	transcription start site region 99953	181 bp upstream
Tssr99954	transcription start site region 99954	142 bp downstream
Tssr99955	transcription start site region 99955	175 bp downstream
Tssr99956	transcription start site region 99956	930 bp downstream
Tssr99957	transcription start site region 99957	997 bp downstream