rs257913019 SNP Detail

Summary

• ID
  rs257913019
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24559734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTCCTGT GGTCACTACA
  TACTTTTAAC CCTCCCAGGG CGAATGCACT AAGAATCTAT GATGGGGATG GGGGAGGTGG
  AGGTACAGGC TATGACATGT TTCTTACCAT AACCCTAACC ATTTGAACTT AACAGTTATC
  TGCAAAAGTT TCATTTACAA AGGAATCCAT GCTGGCACAG AAACAAAGTT CTAGGTAGCA
  W
  ACAAACTTTC TAGGCTTCCT GAGGAAGCTC CATCCTCTCT GTGCTGTGAA GAGCCAGTAT
  AAGCATGTTC CCAGGCCCAA CCCATGCTTT TCCTACTGGA ATGCCAGATT CTACCAGATC
  AGTTCACAGA TAGCTCAACA GAAGAGGAAA TAAGAGAACT CACTTAAACG TCTGTTTCTT
  GAGGCCACAA CTGCAATGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324295911	CHEV_13_24467620	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257913019					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24559734 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Rr476038	regulatory region 476038	690 bp distal
Rr476039	regulatory region 476039	within coordinates
Rr476040	regulatory region 476040	189 bp proximal
Tssr4016	transcription start site region 4016	299 bp upstream
Tssr118892	transcription start site region 118892	283 bp upstream
Tssr118893	transcription start site region 118893	319 bp upstream
Tssr118894	transcription start site region 118894	383 bp upstream
Tssr118895	transcription start site region 118895	417 bp upstream
Tssr121784	transcription start site region 121784	191 bp downstream
Tssr121785	transcription start site region 121785	211 bp downstream
Tssr121786	transcription start site region 121786	271 bp downstream