rs257913324 SNP Detail

Summary

• ID
  rs257913324
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:57072490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAGTGAT TGCTGGGAAA
  ACAAGTGAAA CGAAATGCTA GGAAGAAAAA TTCGTAGTTT CTTTCTTCAT TAATGTTAAT
  ATTTTAGAAA AACAAGATTT GAAACAAAAA GGCAAGTGCA TTGGCCGGGA ATCGAACCCG
  GGCCTCCCGC GTGGCAGGCG AGAATTCTAC CACTGAACCA CCAATGCAAG CACATATTAT
  R
  GTGTTCTGTT ATACTATACT AGGATATATT TACACATGAG TAATTCTTGT GTCAATTCTG
  TTTTTATATA TATATTTAAA AATTAGGAAA AGAAACAGAA TTCTTTTGTT TTTCTCCTTA
  AGTTTTTAAA TCTCACTTAC ATACATTGTA TTTGAAGATA GTTCCACTGA TCACAGAATC
  TTAGGGCAGA AAACGTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354085944	MGP_WTSI_2_57034889	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	G	G	G	G	A	A	A	G	G	G	G	G	G	A	G	A	A	G	A	A	A	A	G	G	G	A	G	G	G	A	A	G	A	G	A	G	A	A	A	A	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257913324					SNP	A	A	A	A	A	G	G	G	G	A	A	A	G	G	G	G	G	G	A	G	A	A	G	A	A	A	A	G	G	G	A	G	G	G	A	A	G	A	G	A	G	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354085944	MGP_WTSI_2_57034889	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:57072490 () rs orientation: forward

Symbol	Name	Function Class
4930555B11Rik	RIKEN cDNA 4930555B11 gene	within coordinates
BB557941	expressed sequence BB557941	724 bp upstream
Cpgi11661	CpG island 11661	333 bp distal
n-TAcgc8	nuclear encoded tRNA alanine 8 (anticodon CGC)	329 bp downstream
n-TGgcc8	nuclear encoded tRNA glycine 8 (anticodon GCC)	14 bp upstream
Rr396968	regulatory region 396968	198 bp downstream
Rr557184	regulatory region 557184	736 bp distal
Rr557185	regulatory region 557185	660 bp distal
Rr557186	regulatory region 557186	within coordinates
Tssr24122	transcription start site region 24122	716 bp upstream