rs257916529 SNP Detail

Summary

• ID
  rs257916529
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:45543626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGCCATG CTGTGCTATG
  TGACGAGGCC GGACGCGGTG CTGATGGAGG TAGAGGTGGA GGCAAAAGCC AACGGCGAGG
  ACTGTCTCAA CCAGGTGAGG GCGGCGATCG GAAAGGGGAT CCCTTCTTGT CCCCGGGAAG
  CCTCGGGGCT CGGGGATGCT CCCCGGGAGC CGGGCGACGT TGCAGCAGCG GCCCGTGGAG
  Y
  GCTCCCGGGA CGCCAGGCTC CAGCCTCCTC CTCCTCCCCG CGAGTGGAGA GTGCGGTGGG
  GGGGGGGCGG GGGGAGCATA GAGGACGCTT ACGGTGGGGG ATCCGGGGCC CGGAGACCAG
  AACACTGCTG GGAACCTCCA CCCTGTCCGT TAGCCTGGCA CTTTTCTCTA AAGAAGGTGG
  CCCGGCACAC CTGCCGCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss388479185	MGP_WTSI_13_45485519	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs257916529					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388479185	MGP_WTSI_13_45485519	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:45543626 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5531	CpG island 5531	within coordinates
Gm56579	predicted gene, 56579	1661 bp upstream
Mylip	myosin regulatory light chain interacting protein	within coordinates
Rr403746	regulatory region 403746	411 bp downstream
Rr478672	regulatory region 478672	1458 bp distal
Rr478673	regulatory region 478673	398 bp distal
Rr478674	regulatory region 478674	617 bp distal
Rr478675	regulatory region 478675	287 bp proximal
Rr478676	regulatory region 478676	1171 bp proximal
Rr478677	regulatory region 478677	1672 bp proximal
Tssr119571	transcription start site region 119571	400 bp downstream
Tssr119572	transcription start site region 119572	1614 bp upstream
Tssr119573	transcription start site region 119573	1630 bp upstream