rs257921655 SNP Detail

Summary

• ID
  rs257921655
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59955575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGCCTG TTTCTCTCTG
  GCCCCTCCCT CCTCTCCCAC CCATCTCTGA ATACCTTCCC TATCTATGGA AGAGGCAGGA
  AGGCTGCACG GAGCAAGTGA GAAACCTGGA GGCTGCTCAC AGAAATGGGG TCTGCTGCTT
  CATTTCTGGA TGCAAACCAT CTGGCACTGG CGGATGGCCT TAGGTGGCCC CATGTTCATG
  Y
  GCTCCACATC TGTATGCTTA TGTGCATATC CATAGAATCG AGGAGGATGA ATGTGCACAC
  GCCTGTACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC TATGTGCTCT
  CATAGGGGTA CATGTATACA CCTAGGTAGG CCTGAATGAA TGGCCCAGTT TTACTTTGAC
  CATTGCCTGC CTGGCTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323323914	CHEV_10_59582501	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257921655					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59955575 () rs orientation: forward

Symbol	Name	Function Class
Gm51801	predicted gene, 51801	within coordinates
Rr219869	regulatory region 219869	1175 bp distal
Rr219870	regulatory region 219870	175 bp distal
Rr228068	regulatory region 228068	1426 bp proximal
Spock2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	within coordinates