rs257922686 SNP Detail

Summary

• ID
  rs257922686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:95249388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATTTATA AACCTGTACC
  ACAGTGCTCA ACTAATTTCT CTTGTTACAC CTTTTTTTTT TTTTTTTAAA GCCTGTGAGT
  TAAAGTTTAC CAAGGCCTAC CACAAATCTC TGGGTAAGTA TTTAATAAAA ACTTAAGTCC
  ATTCTAGGCA CAACTGTAAA GCAATTTTTT TCTTTTCAAA TGATTTTCTG TAGCTTTTCT
  Y
  TAAATTATGT TAAGGTTTTC TCCTAATGAG CTAAAAGAAC TTTTGCAATA TGACAGACAT
  ATTGGCTGAC AAAGAAAAAA AAAAAAAAAA AAACCTTTCA GTACAGTTTA ACTGAAACAA
  AAACCTAAGT AAATCAGAAC TAAATTAGAA GTTAGGGGAC AAAGTGGAAA GCTTATCTCC
  GATAATTCCA TTAAAAACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381349695	MGP_WTSI_10_94876160	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257922686					SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381349695	MGP_WTSI_10_94876160	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:95249388 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2139	CpG island 2139	780 bp proximal
Gm33230	predicted gene, 33230	576 bp upstream
Rr225467	regulatory region 225467	12 bp proximal
Rr385140	regulatory region 385140	1312 bp upstream
Socs2	suppressor of cytokine signaling 2	within coordinates
Tssr95356	transcription start site region 95356	1750 bp downstream
Tssr95357	transcription start site region 95357	1478 bp downstream
Tssr99030	transcription start site region 99030	67 bp downstream
Tssr99031	transcription start site region 99031	1668 bp downstream
Tssr99032	transcription start site region 99032	1759 bp downstream
Tssr99033	transcription start site region 99033	1939 bp downstream
Tssr99034	transcription start site region 99034	1971 bp downstream