rs257923849 SNP Detail

Summary

• ID
  rs257923849
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140843105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTTCCCG ATTCCTGTCT
  TAGAGTGTTT GTGTCCAGTA AGAGCTGTGC TAGCCTAGCC AGTTCTTGAT TATGAAAGTG
  AGTGCTGCAA AGGAGGCCTG GTGTGTAGGG ACTGGGGGTC ACCTTCTTTC AAGGGACTCT
  ACAAGGTCCA CTAGAGACAC TATACAGCAA GGAGCAGACC TGACCCAGGG CTCCACTGAT
  K
  TTGAACTATT TATTGGGAGT TGGGATTCTG AGTCAAGGCC ACTGACCCAG GTCCATGAGG
  AAGTGTTCGA TGTCTTCGTA GAGACTGTTG GTGCTAGACA AGCACAAGCC GAGACTGCTG
  CTGTCCAGGG AGGACACACC CTCACGCTGC ACGCCCTCCA GGTATGCCTT GCATACCCAT
  GGCTCCAGCT GTGGAAAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373428485	MGP_WTSI_7_148449091	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257923849					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373428485	MGP_WTSI_7_148449091	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140843105 () rs orientation: forward

Symbol	Name	Function Class
Irf7	interferon regulatory factor 7	within coordinates
Phrf1	PHD and ring finger domains 1	442 bp downstream
Rr154683	regulatory region 154683	1896 bp proximal
Rr166948	regulatory region 166948	1695 bp proximal
Tssr69941	transcription start site region 69941	within coordinates
Tssr75604	transcription start site region 75604	333 bp downstream
Tssr75605	transcription start site region 75605	491 bp downstream
Tssr75606	transcription start site region 75606	629 bp downstream
Tssr75607	transcription start site region 75607	705 bp downstream
Tssr75608	transcription start site region 75608	762 bp downstream
Tssr75609	transcription start site region 75609	780 bp downstream
Tssr75610	transcription start site region 75610	805 bp downstream
Tssr75611	transcription start site region 75611	1061 bp downstream
Tssr75612	transcription start site region 75612	1323 bp downstream