rs257924901 SNP Detail

Summary

• ID
  rs257924901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123619609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTTGGTC TAGGACTAGC
  TAGAATCCTG GGTACTTCAG TCAGCAATAC TCTCAAAGTC CACTCAGACA CGGAGGGCCA
  CTCTGTCTCA AGGTGGGTGA AGTCTCATAG TGCTTCAGTG GTATTGGCGA GCAGGCAGCT
  GGCAACACTA CTGACCTGAC TGTTAGGAAT AGGCTGAGTC ATTAGAGGAG AGGCTGCCCT
  Y
  AGGAAGAGAA TCACCAAGAT CTCAAGGATG TTTCCTTATG ATCTTTGGTG TAATTAAATC
  CAGCTGGGCC ATCATCTTCC TTAATGATTC TTCAGTTGTC AATTGCATTT TTCAAAAATT
  TACTCCAATG ACTAAACCCC AGTAAAACTG GGGACTACTT AAAACCATAA AGCTATGTAT
  GAAAGGCACA CTTACACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323234317	CHEV_9_123699662	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257924901					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123619609 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	1510 bp downstream
Tssr92158	transcription start site region 92158	1525 bp downstream
Tssr92159	transcription start site region 92159	1533 bp downstream
Tssr92160	transcription start site region 92160	1926 bp downstream
Tssr92161	transcription start site region 92161	1943 bp downstream