rs257925956 SNP Detail

Summary

• ID
  rs257925956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98179365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGCCTGCC AGATTTCGGA
  AGGGAGAGAG GAGTTCTGAA AAACAAACGT CCTCTAGATA CTAAACATAT CCAACTCTCC
  CGCAAGCCTG GCCCGGCCTG TTTTCCCCAG CTGTGCTGGA ACGGCCCTCC GCGTGGTTTA
  GAGACTCAGG ACCAGCTGTC TCCTGGATAG TGACGGCCTT ATGCCTCATC CCTCCGCACC
  Y
  TTCATCCATC ACACACCGAC CTAGTGACGC AGGATTTAAG GTTTAAGAAA GGGGACTTCC
  TCTTTTCTTT CTCTTTTTTT TTCTATTTGA TAATTTTTCC ATTTTTCATT AATTCTGAGA
  GTTTCATGCG ACGTGTACTG ATCATATATA TTTTTCACAC ACACACACCC AACACCTCCC
  TACCCCTAAC TCCTCTGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365959482	MGP_WTSI_5_98460525	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257925956					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365959482	MGP_WTSI_5_98460525	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98179365 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	489 bp upstream
Cpgi16083	CpG island 16083	within coordinates
Gm42759	predicted gene 42759	within coordinates
Rr615103	regulatory region 615103	within coordinates
Rr615104	regulatory region 615104	1421 bp proximal
Tssr1554	transcription start site region 1554	544 bp upstream
Tssr47433	transcription start site region 47433	782 bp downstream
Tssr47434	transcription start site region 47434	770 bp downstream
Tssr47435	transcription start site region 47435	396 bp downstream
Tssr47436	transcription start site region 47436	217 bp downstream
Tssr47437	transcription start site region 47437	196 bp downstream
Tssr47438	transcription start site region 47438	1794 bp upstream
Tssr51988	transcription start site region 51988	890 bp upstream
Tssr51989	transcription start site region 51989	879 bp upstream
Tssr51990	transcription start site region 51990	859 bp upstream
Tssr51991	transcription start site region 51991	741 bp upstream
Tssr51992	transcription start site region 51992	686 bp upstream
Tssr51993	transcription start site region 51993	514 bp upstream
Tssr51994	transcription start site region 51994	468 bp upstream
Tssr51995	transcription start site region 51995	252 bp upstream
Tssr51996	transcription start site region 51996	190 bp upstream
Tssr51997	transcription start site region 51997	159 bp upstream
Tssr51998	transcription start site region 51998	118 bp upstream
Tssr51999	transcription start site region 51999	85 bp upstream
Tssr52000	transcription start site region 52000	57 bp upstream
Tssr52001	transcription start site region 52001	43 bp upstream
Tssr52002	transcription start site region 52002	19 bp upstream
Tssr52003	transcription start site region 52003	7 bp downstream