rs257928870 SNP Detail

Summary

• ID
  rs257928870
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115506857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGAGTGAG CCTTCAGTTA
  CAGCAAAGCC AGGTCAGCGA GCAATCCAAT GCTTTTTTCT TTTATGGAGC TTTTCCTTGG
  CTGGAGAGGC CTCCGAGAAA CAGCAGCCTT AAACAAGTTA CAAAGAAAAG AATCAGGGAA
  AATGCCCAGC ACACTAGCAT AATTCATTCT AGCCAAGGCA TTGCTCCAAC TTTGTTGATG
  R
  TTTGTTTTAA GGATACAGGA CACAGGGAGG ATTTTTTTTA ACTCAAATGG TCATTTCTAT
  TAACAAAACA AAAATAAACA AACAAAAGAG AAATGAAGTT AGAAAGAGAG GTAGAAAAAA
  CAATTTACCC AGACTCTGAG GAGACAAAAC CTTCCCTTGG GTCACTAAAT CCACCAAGAT
  GGAAATGAGA GCCACCCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359333850	MGP_WTSI_3_115416126	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257928870					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359333850	MGP_WTSI_3_115416126	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115506857 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13724	CpG island 13724	657 bp distal
Cpgi13725	CpG island 13725	1436 bp proximal
Gm9889	predicted gene 9889	1815 bp upstream
S1pr1	sphingosine-1-phosphate receptor 1	within coordinates
Tssr31332	transcription start site region 31332	1948 bp upstream
Tssr35271	transcription start site region 35271	1963 bp upstream
Tssr35272	transcription start site region 35272	1927 bp upstream
Tssr35273	transcription start site region 35273	654 bp upstream
Tssr35274	transcription start site region 35274	595 bp upstream
Tssr35275	transcription start site region 35275	341 bp upstream
Tssr35276	transcription start site region 35276	509 bp downstream
Tssr35277	transcription start site region 35277	585 bp downstream
Tssr35278	transcription start site region 35278	1572 bp downstream
Tssr35279	transcription start site region 35279	1594 bp downstream
Tssr35280	transcription start site region 35280	1646 bp downstream
Tssr35281	transcription start site region 35281	1681 bp downstream
Tssr35282	transcription start site region 35282	1725 bp downstream
Tssr35283	transcription start site region 35283	1823 bp downstream