rs257931082 SNP Detail

Summary

• ID
  rs257931082
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73189376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAA AATTTAAAAG CTAATTTAAA
  M
  AAGAATTTTA TGTAAAATTA TAAAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322260284	CHEV_7_80684514	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257931082					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73189376 () rs orientation: forward

Symbol	Name	Function Class
Chaserr	CHD2 adjacent suppressive regulatory RNA	170 bp downstream
Chd2	chromodomain helicase DNA binding protein 2	within coordinates
Cpgi19266	CpG island 19266	1470 bp distal
Gm44686	predicted gene 44686	within coordinates
Rr167999	regulatory region 167999	within coordinates
Rr380950	regulatory region 380950	914 bp downstream
Rr380951	regulatory region 380951	1684 bp upstream
Tssr67202	transcription start site region 67202	1658 bp downstream
Tssr67203	transcription start site region 67203	1570 bp downstream
Tssr67204	transcription start site region 67204	1536 bp downstream
Tssr67205	transcription start site region 67205	250 bp downstream
Tssr72947	transcription start site region 72947	1862 bp upstream
Tssr72948	transcription start site region 72948	355 bp upstream
Tssr72949	transcription start site region 72949	1260 bp downstream
Tssr72950	transcription start site region 72950	1457 bp downstream
Tssr72951	transcription start site region 72951	1797 bp downstream
Tssr72952	transcription start site region 72952	1868 bp downstream