rs257940133 SNP Detail

Summary

• ID
  rs257940133
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25112973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAAGAAG ACGTTCACTT
  TGGGTGTGCT GGTGTGTGCC AGCACTGGAG GCTGAAGAGG GCTTTGAGTT TCCCCTCCCC
  TCCCCTCCCC TCCCCTCCCC TCCCCTCCCC TCCCCTCCCC TCCCCTCCCC TCCCCTCCCC
  TCCCCTCCCT TCCTTTCCTC TCCTCTTCAA TTCTCTCTCT CTCTCTCTTA ACAAAGAAAG
  M
  AAAACAAAAA TGAAGGGCTA GTGGCTGCCT GGCGAGTGAG CTGATGATCT AACTTCAATC
  CCCACTGTTC ACAGGAAGTA GAGAAATCAG TGCATTGTCC TTTGACTGCT ATAGTCATTT
  GGTGCATGCA CACTCCCCTC ATCCTTAAAT AACTGTAATG AAGAACGAAG GGCTAGGGAT
  GTAGCTTAGA GATAAGATGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322121693	CHEV_7_26198567	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257940133					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25112973 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	662 bp upstream
Rr164493	regulatory region 164493	157 bp proximal
Rr170192	regulatory region 170192	1222 bp distal
Rr170193	regulatory region 170193	within coordinates
Tssr2143	transcription start site region 2143	746 bp upstream
Tssr2144	transcription start site region 2144	598 bp upstream
Tssr2145	transcription start site region 2145	574 bp upstream
Tssr2146	transcription start site region 2146	561 bp upstream
Tssr2147	transcription start site region 2147	516 bp upstream
Tssr71243	transcription start site region 71243	732 bp upstream
Tssr71244	transcription start site region 71244	707 bp upstream
Tssr71245	transcription start site region 71245	692 bp upstream
Tssr71246	transcription start site region 71246	663 bp upstream
Tssr71247	transcription start site region 71247	635 bp upstream