rs257940579 SNP Detail

Summary

• ID
  rs257940579
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:57011760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGCAGGCT GGCGCTCGGG
  AGGCGGCAGA GGCTGCCTCG TCTCCGGGCT CTGTTAATTG CGCCGCCGAG TACTTTCGAC
  TTTGGAGATA GGAGGGCGAT CGCCTCCCCC ACCCACCGCC TCCGCCCACC ACCCACCGCC
  TCCGCCCCTC GGAGCAACTT TTCTCGGTGC GAGCGAGCTC CCCATCTGCT CGGAGCCGAC
  S
  GGCCCGGCCC GAAGCGCTCC CGGCCGCGTT TGGGGAAGGC CACTTCTCCC TCAAATCCCG
  TGCGGCCGCG GGTCCGGAAC AATAGCCCGG GTGTCCCGAA CGCCTGGAGC GAGACTCCGC
  CCGTCCGGCT GGCTGTGGGT CCGGCACTGG AGAAAGGGTT GCTCCGTGGG CACAAGGCAG
  GCTGCATCCC TGCCACTCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss349733849	MGP_WTSI_1_57029445	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	G	C	G	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	G	C	G	C	C	C	C	G	C	C	C	C	G	G	G	C	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs257940579					SNP	C	C	C	C	G	C	G	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	G	C	G	C	C	C	C	G	C	C	C	C	G	G	G	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349733849	MGP_WTSI_1_57029445	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:57011760 () rs orientation: forward

Symbol	Name	Function Class
9130024F11Rik	RIKEN cDNA 9130024F11 gene	within coordinates
Cpgi268	CpG island 268	1384 bp distal
Cpgi269	CpG island 269	within coordinates
Satb2	special AT-rich sequence binding protein 2	within coordinates
Tssr6736	transcription start site region 6736	1096 bp downstream
Tssr6737	transcription start site region 6737	557 bp downstream
Tssr6738	transcription start site region 6738	395 bp downstream
Tssr6739	transcription start site region 6739	12 bp downstream
Tssr6740	transcription start site region 6740	1431 bp upstream
Tssr11747	transcription start site region 11747	1323 bp upstream
Tssr11748	transcription start site region 11748	1296 bp upstream
Tssr11749	transcription start site region 11749	1272 bp upstream
Tssr11750	transcription start site region 11750	1254 bp upstream
Tssr11751	transcription start site region 11751	892 bp upstream
Tssr11752	transcription start site region 11752	862 bp upstream
Tssr11753	transcription start site region 11753	841 bp upstream
Tssr11754	transcription start site region 11754	820 bp upstream
Tssr11755	transcription start site region 11755	389 bp upstream
Tssr11756	transcription start site region 11756	347 bp upstream
Tssr11757	transcription start site region 11757	119 bp upstream
Tssr11758	transcription start site region 11758	1899 bp downstream