rs257941243 SNP Detail

Summary

• ID
  rs257941243
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:36916504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACCACAC ATCGGTCGAG
  TTCCCAGTCC TTTCTGAACC CGGTTTCTGT AACCCCGAGA CAGGCAGCCG GCCTGTCTCC
  TCTGCATCCC CATCCAGTGC GGTTTCCATG TTCTCATTCA TTTCTTGGAC CTCTCTCATT
  CATCCCAAAC TTCCTCATTC GTTCTCCATC CTCTACTTCC CCGCCCCTCC CCAACCCCCA
  M
  GCTTCTTGCC AAATGTCAGT AATTTGGGAC AGCTTCTATC CATGAATTAA TAAAGACTGA
  GGCTCCAATG GGGGGCGGGG GAGAAAGGTA GATATTTAGG AACATACATT TTAATTCCAC
  TATGAAAATT TTGGTCATCT TCAGGCTGAG GTTCATCAAA TGCATCTCTC CTGAAATTAC
  TGTTTCATTA TTTCTATTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388276781	MGP_WTSI_13_36824399	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257941243					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388276781	MGP_WTSI_13_36824399	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36916504 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5450	CpG island 5450	187 bp distal
Gm30177	predicted gene, 30177	1228 bp downstream
Nrn1	neuritin 1	Intron
Rr477391	regulatory region 477391	1753 bp distal
Rr477392	regulatory region 477392	795 bp distal
Rr477393	regulatory region 477393	294 bp distal
Rr477394	regulatory region 477394	707 bp proximal
Rr477395	regulatory region 477395	1937 bp proximal
Tssr122097	transcription start site region 122097	1736 bp downstream
Tssr122098	transcription start site region 122098	1763 bp downstream
Tssr122099	transcription start site region 122099	1841 bp downstream
Tssr122100	transcription start site region 122100	1874 bp downstream
Tssr122101	transcription start site region 122101	1896 bp downstream
Tssr122102	transcription start site region 122102	1920 bp downstream