rs257944785 SNP Detail

Summary

• ID
  rs257944785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129158532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAAGGAA GCAAAATTGT
  GTTTCTTGTG TTTCAAACTG TCTATGCTCC ATTATATTGT GTTCCTTTAT TTTCCTTTTC
  CCCCTCATTC CTGTTTCTTC ACATTAATTT TTTTTTTTTT AATTTGTGGA AAGACTACTG
  AATTTTGAGA AAGTAAGATT GACATCTATC AAAATACAAA ATTCCCAACA AATGCTAATG
  Y
  TTATCACTTA AACCAAGTAT TCTGAAATAA TAATAATAAT AATAATAATA ATAAATTATA
  ATAAATTATT ATTACTGAGG ATGATGATGA CTGACTGACT GATTGATTGA TTGATTGATT
  CTTTGGCAAA GTCTCATACT TTACCCCAAG CTGGCCTGGA ACTCCTGCTC CCTCTGCCTC
  AGCAGGGTTG ACTTTTTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370045195	MGP_WTSI_6_129131587	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257944785					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370045195	MGP_WTSI_6_129131587	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129158532 () rs orientation: forward

Symbol	Name	Function Class
Clec2d	C-type lectin domain family 2, member d	within coordinates
Gm53342	predicted gene, 53342	within coordinates
Gm68195	predicted gene, 68195	1204 bp downstream
Rr368193	regulatory region 368193	180 bp downstream
Tssr59096	transcription start site region 59096	939 bp downstream
Tssr59097	transcription start site region 59097	913 bp downstream
Tssr59098	transcription start site region 59098	630 bp downstream
Tssr59099	transcription start site region 59099	601 bp downstream
Tssr59100	transcription start site region 59100	556 bp downstream
Tssr59101	transcription start site region 59101	262 bp downstream
Tssr59102	transcription start site region 59102	208 bp downstream
Tssr59103	transcription start site region 59103	283 bp upstream
Tssr59104	transcription start site region 59104	353 bp upstream
Tssr59105	transcription start site region 59105	1109 bp upstream
Tssr59106	transcription start site region 59106	1133 bp upstream
Tssr59107	transcription start site region 59107	1363 bp upstream
Tssr59108	transcription start site region 59108	1429 bp upstream
Tssr59109	transcription start site region 59109	1542 bp upstream
Tssr63546	transcription start site region 63546	1264 bp downstream