rs257948581 SNP Detail

Summary

• ID
  rs257948581
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25404104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAGGAGAG CGGCATGGAC CTGTGGTTGA
  GGCAGGTGTT GGAAGAGGAG GACGAGGAGG AGCCGGAAGG TCCTCCGGAG GAGCTTGAAG
  CTCCGGCCCT CTACGGGGCT AGAACGTAAC AGGGTGCGTG CTGAGGAAGG GACTAGGCAG
  S
  CGTCCTTTCG TTGTTGAATT TGACGATTTC TGAACTGGTT CTGCGCATGT CCTCGTTGCT
  TAAAGGACTT GGATGGCGCT CTTGGCGCTG AGACACAAGA ACACAGCACA AAGTTGGAGG
  CTTGAAATCT GATCTTTGCC GAACACCAAT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325336547	CHEV_17_25322075	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257948581					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25404104 () rs orientation: forward

Symbol	Name	Function Class
4930568E02Rik	RIKEN cDNA 4930568E02 gene	561 bp upstream
Cpgi8755	CpG island 8755	within coordinates
Rr370183	regulatory region 370183	549 bp downstream
Rr523507	regulatory region 523507	1606 bp distal
Rr523508	regulatory region 523508	1702 bp distal
Rr523509	regulatory region 523509	71 bp distal
Tssr5037	transcription start site region 5037	567 bp downstream
Tssr143142	transcription start site region 143142	528 bp downstream
Tssr143143	transcription start site region 143143	512 bp downstream
Tssr146818	transcription start site region 146818	728 bp upstream
Tssr146819	transcription start site region 146819	662 bp upstream
Uqcc4	ubiquinol-cytochrome c reductase complex assembly factor 4	within coordinates