rs257953338 SNP Detail

Summary

• ID
  rs257953338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131801442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tccctccct ccctcAATTC CCAAGCAAGT
  CTCCCTAGCT TCCCTTCCTC GCCCCAGCCT CCTGTCAGCA TAGACCCCCA TCCAGGCCCG
  TGATCCGGGT GAGGACTACA TGTGGACAAG CACTTACTAG TGTGGGGGAG GAGAGGTACT
  R
  CGACAGTGCT CTGGCCTCTC CCCCGCCCCT TCAGTAGCTG AGGACCCGAC CCTGACTTGG
  CCCCAAGCAA CTATGCCTAG AACTCCAGCT TCCTTAAAGT CCACCCGGAA TCAGCTATTC
  TCCTAGAGCC TGTACGTTTA GAAGGCGGCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321330374	CHEV_4_131630046	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257953338					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131801442 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14949	CpG island 14949			259 bp proximal
Epb41	erythrocyte membrane protein band 4.1			Intron
				Noncoding-Transcript-Variant
Gm10300	predicted gene 10300			566 bp upstream
Rr1070	regulatory region 1070			1138 bp upstream
Rr600863	regulatory region 600863			925 bp distal
Rr600864	regulatory region 600864			76 bp proximal
Rr600865	regulatory region 600865			577 bp proximal
Rr600866	regulatory region 600866			1151 bp proximal
Tssr39361	transcription start site region 39361			1473 bp upstream
Tssr43633	transcription start site region 43633			1119 bp downstream
Tssr43634	transcription start site region 43634			1168 bp downstream
Tssr43635	transcription start site region 43635			1286 bp downstream