rs257957840 SNP Detail

Summary

• ID
  rs257957840
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87844283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCAATA TACAATGATA
  ATTAAGGTAT TTAGTAAGTT ATATTAGCAG GTTATTAATA TAATATATAA TGGGACATTT
  GATGAAACTT ACATTTAAAT TATTTAAAAC ACATTGTATA AGCCTACTGT TTACAAGAAA
  AGTGAGTGCA GTCCAGAGAG AAAAAGAAAT TAGTGAGCAG AGTATACAAA GAGACATCTA
  W
  ACAATGCTAA TTCTTTCTCT GTCTACAGGT GAACTTTAAA TTCCATTCTT AAATCAAAAC
  ACACAAACAT AATGGAAAAT ACAGACTAAT GGCAATATAT TACAGTAGTC ACTATGAGTT
  TGCTTGCTAC TATGCTAGGC TTCAAATAAG CCATGAGAAA TGAATACTTC CTCTGAGGTA
  TTTGCAGCAT TGTGACGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777319	MGP_WTSI_5_88125449	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257957840					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777319	MGP_WTSI_5_88125449	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87844283 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
Tssr1529	transcription start site region 1529	1863 bp downstream
Tssr46883	transcription start site region 46883	1913 bp downstream
Tssr46884	transcription start site region 46884	1898 bp downstream
Tssr46885	transcription start site region 46885	1877 bp downstream
Tssr46886	transcription start site region 46886	1847 bp downstream
Tssr46887	transcription start site region 46887	1830 bp downstream
Tssr46888	transcription start site region 46888	1724 bp downstream
Tssr46889	transcription start site region 46889	1705 bp downstream
Tssr46890	transcription start site region 46890	1672 bp downstream
Tssr46891	transcription start site region 46891	1659 bp downstream
Tssr46892	transcription start site region 46892	1630 bp downstream
Tssr46893	transcription start site region 46893	1604 bp downstream
Tssr46894	transcription start site region 46894	1559 bp downstream
Tssr46895	transcription start site region 46895	1539 bp downstream
Tssr46896	transcription start site region 46896	1460 bp downstream
Tssr51618	transcription start site region 51618	1884 bp upstream
Tssr51619	transcription start site region 51619	1850 bp upstream
Tssr51620	transcription start site region 51620	1840 bp upstream
Tssr51621	transcription start site region 51621	1821 bp upstream
Tssr51622	transcription start site region 51622	1785 bp upstream
Tssr51623	transcription start site region 51623	1769 bp upstream
Tssr51624	transcription start site region 51624	1752 bp upstream
Tssr51625	transcription start site region 51625	1742 bp upstream
Tssr51626	transcription start site region 51626	1730 bp upstream
Tssr51627	transcription start site region 51627	1704 bp upstream
Tssr51628	transcription start site region 51628	1594 bp upstream
Tssr51629	transcription start site region 51629	1500 bp upstream
Tssr51630	transcription start site region 51630	1452 bp upstream
Tssr51631	transcription start site region 51631	1413 bp upstream
Tssr51632	transcription start site region 51632	1154 bp upstream
Tssr51633	transcription start site region 51633	350 bp upstream
Tssr51634	transcription start site region 51634	245 bp upstream
Tssr51635	transcription start site region 51635	715 bp downstream
Tssr51636	transcription start site region 51636	741 bp downstream
Tssr51637	transcription start site region 51637	854 bp downstream
Tssr51638	transcription start site region 51638	1630 bp downstream
Tssr51639	transcription start site region 51639	1637 bp downstream